Research Notes

This page contains research notes, technical documentation, and tutorials related to my work in computational biology and bioinformatics.

Technical Tutorials

Step-by-step guides for various bioinformatics and computational tasks:

• Coming soon: Setting up a machine learning environment for genomic data analysis
• Coming soon: Processing and analyzing ChIP-seq data

Research Insights

Notes on research findings, literature reviews, and methodological considerations:

• Coming soon: Comparing deep learning architectures for epigenetic prediction
• Coming soon: Integrating multi-modal genomic data - challenges and approaches

Tool Documentation

Documentation for tools and software developed by The Bonney Lab:

• Coming soon: EpiBench user guides and tutorials

Reference Notes

Reference materials and technical notes for common bioinformatics tasks:

• Coming soon: Common file formats in genomics research
• Coming soon: Best practices for reproducible computational research

Meta

Notes about this site and research documentation practices:

• Setting Up a Research Website with Quartz
• Building a Personal Knowledge Management System

These notes are regularly updated as research progresses and new insights emerge.